PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000347.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 282aa    MW: 30967.5 Da    PI: 8.1302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000347.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19126174355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++GVr+++ +g+W+AeIrdp     +  +r++lg+f taeeAa+a+++ + +++g
  Itr_sc000347.1_g00013.1 126 FRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFNTAEEAARAYDKKAIEFRG 174
                              8*******.**********7.....337************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.5E-32125182IPR001471AP2/ERF domain
SMARTSM003805.9E-37125188IPR001471AP2/ERF domain
PROSITE profilePS5103224.144125182IPR001471AP2/ERF domain
CDDcd000181.52E-31126182No hitNo description
SuperFamilySSF541712.88E-22126183IPR016177DNA-binding domain
PfamPF008475.3E-13126174IPR001471AP2/ERF domain
PRINTSPR003671.3E-11126137IPR001471AP2/ERF domain
PRINTSPR003671.3E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNRIGRRLKQ ERSSGDQGHR TPARLTGDQE FSVMVSALKN VISGNAVTAE ENVDLFSSFE  60
FLAAATAGDS STSAAAELPP FLSVPEGNTC QFCGISGCLG CNFFGPTEAG EDKKNNKNVA  120
KKKKNFRGVR QRPWGKWAAE IRDPHKAARV WLGTFNTAEE AARAYDKKAI EFRGPRAKLN  180
FPFADYTSSN PHQLLQRSAS TPSSHLRRPM PPPPPPQQQQ EISAKMSNLA AKMEVGTSSN  240
ENELWKFGED EVQNCWTMMM DFNGDSSDSA GGYVQPSDHQ SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-23122183264ATERF1
2gcc_A9e-23122183264ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066876.17e-70PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-38EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A067LCS41e-69A0A067LCS4_JATCU; Uncharacterized protein
STRINGPGSC0003DMT4000663431e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-35redox responsive transcription factor 1